So I have my python source files in two different directories:- e.g. ~/work/myproject ~/.virtualenvs/myproject How do I use sphinx-apidoc to look in both directories recursively to generate my reST files? Obviously, sphinx-apidoc -o docs/source ~/work/myproject works perfectly fine but when I attempt to run sphinx-apidoc -o docs/source ~/.virtualenvs/myproject again, sphinx tells me that "docs/source/modules.rst already exists, skipping" which of course is true as I have already run sphinx-apidoc once to generate it. So how do I execute it once and search in both directories? Continue reading...