Is it possible to assign colours to leaf labels of dendrogram plots from Scipy? I can't figure it out from the documentation. Here's what I've tried so far: from scipy.spatial.distance import pdist, squareform from scipy.cluster.hierarchy import linkage, dendrogram distanceMatrix = pdist(subj1.ix[:,:3]) dendrogram(linkage(distanceMatrix, method='complete'), color_threshold=0.3, leaf_label_func=lambda x: subj1['activity'][x], leaf_font_size=12) Thanks. Continue reading...