[Python] Pandas pivot ValueError: Index contains duplicate entries, cannot reshape

Discussão em 'Python' iniciado por Stack, Julho 27, 2025.

  1. Stack

    Stack Membro Participativo

    I have a dataframe as shown below (top 3 rows):

    Sample_Name Component_Name Calculated_Concentration
    Index
    1 20170824_ELN147926_HexLacCer_Plasma_A-1-1 GluCer(d18:1/12:0)_LCB_264.3 NaN
    2 20170824_ELN147926_HexLacCer_Plasma_A-1-1 GluCer(d18:1/17:0)_LCB_264.3 NaN
    3 20170824_ELN147926_HexLacCer_Plasma_A-1-1 GluCer(d18:1/16:0)_LCB_264.3 125.92766


    When trying to generate a pivot table:

    pivoted_report_conc = raw_report.pivot(
    index="Sample_Name",
    columns='Component_Name',
    values="Calculated_Concentration")


    I get the following error:

    ValueError: Index contains duplicate entries, cannot reshape


    I tried resetting the index but it did not help. I couldn't find any duplicate values in the "Index" column. Could someone please help identify the problem here?

    The expected output would be a reshaped dataframe with only the unique component names as columns and respective concentrations for each sample name:

    GluCer(d18:1/12:0)_LCB_264.3 GluCer(d18:1/17:0)_LCB_264.3 GluCer(d18:1/16:0)_LCB_264.3
    Sample_Name
    20170824_ELN147926_HexLacCer_Plasma_A-1-1 NaN NaN 125.92766


    To clarify, I am not looking to aggregate the data, just reshape it.

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