this is brew list and pip list (lebienv) ➜ lebi gitmaster) ✗ brew list graphviz libpng libxml2 mysql openssl (lebienv) ➜ lebi gitmaster) ✗ pip list Flask (0.10.1) itsdangerous (0.24) Jinja2 (2.8) MarkupSafe (0.23) pip (8.0.3) setuptools (20.1.1) Werkzeug (0.11.4) wheel (0.29.0) (lebienv) ➜ lebi gitmaster) ✗ and excute pip install pygraphviz (lebienv) ➜ lebi gitmaster) ✗ pip install pygraphviz Collecting pygraphviz Using cached pygraphviz-1.3.1.tar.gz Building wheels for collected packages: pygraphviz Running setup.py bdist_wheel for pygraphviz ... error Complete output from command /Users/zyl/song/lebi/lebienv/bin/python -u -c "import setuptools, tokenize;__file__='/private/var/folders/5t/965cgdc56ks37w8pmlmw4vx40000gn/T/pip-build-x2Vstw/pygraphviz/setup.py';exec(compile(getattr(tokenize, 'open', open)(__file__).read().replace('\r\n', '\n'), __file__, 'exec'))" bdist_wheel -d /var/folders/5t/965cgdc56ks37w8pmlmw4vx40000gn/T/tmp7z72M3pip-wheel- --python-tag cp27: running bdist_wheel running build running build_py creating build creating build/lib.macosx-10.11-intel-2.7 creating build/lib.macosx-10.11-intel-2.7/pygraphviz copying pygraphviz/__init__.py -> build/lib.macosx-10.11-intel-2.7/pygraphviz copying pygraphviz/agraph.py -> build/lib.macosx-10.11-intel-2.7/pygraphviz copying pygraphviz/graphviz.py -> build/lib.macosx-10.11-intel-2.7/pygraphviz copying pygraphviz/release.py -> build/lib.macosx-10.11-intel-2.7/pygraphviz copying pygraphviz/version.py -> build/lib.macosx-10.11-intel-2.7/pygraphviz creating build/lib.macosx-10.11-intel-2.7/pygraphviz/tests copying pygraphviz/tests/__init__.py -> build/lib.macosx-10.11-intel-2.7/pygraphviz/tests copying pygraphviz/tests/test.py -> build/lib.macosx-10.11-intel-2.7/pygraphviz/tests copying pygraphviz/tests/test_attribute_defaults.py -> build/lib.macosx-10.11-intel-2.7/pygraphviz/tests copying pygraphviz/tests/test_attributes.py -> build/lib.macosx-10.11-intel-2.7/pygraphviz/tests copying pygraphviz/tests/test_clear.py -> build/lib.macosx-10.11-intel-2.7/pygraphviz/tests copying pygraphviz/tests/test_drawing.py -> build/lib.macosx-10.11-intel-2.7/pygraphviz/tests copying pygraphviz/tests/test_edge_attributes.py -> build/lib.macosx-10.11-intel-2.7/pygraphviz/tests copying pygraphviz/tests/test_graph.py -> build/lib.macosx-10.11-intel-2.7/pygraphviz/tests copying pygraphviz/tests/test_html.py -> build/lib.macosx-10.11-intel-2.7/pygraphviz/tests copying pygraphviz/tests/test_layout.py -> build/lib.macosx-10.11-intel-2.7/pygraphviz/tests copying pygraphviz/tests/test_node_attributes.py -> build/lib.macosx-10.11-intel-2.7/pygraphviz/tests copying pygraphviz/tests/test_readwrite.py -> build/lib.macosx-10.11-intel-2.7/pygraphviz/tests copying pygraphviz/tests/test_string.py -> build/lib.macosx-10.11-intel-2.7/pygraphviz/tests copying pygraphviz/tests/test_subgraph.py -> build/lib.macosx-10.11-intel-2.7/pygraphviz/tests copying pygraphviz/tests/test_unicode.py -> build/lib.macosx-10.11-intel-2.7/pygraphviz/tests running egg_info writing pygraphviz.egg-info/PKG-INFO writing top-level names to pygraphviz.egg-info/top_level.txt writing dependency_links to pygraphviz.egg-info/dependency_links.txt warning: manifest_maker: standard file '-c' not found reading manifest file 'pygraphviz.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' warning: no previously-included files matching '*~' found anywhere in distribution warning: no previously-included files matching '*.pyc' found anywhere in distribution warning: no previously-included files matching '.svn' found anywhere in distribution no previously-included directories found matching 'doc/build' writing manifest file 'pygraphviz.egg-info/SOURCES.txt' copying pygraphviz/graphviz.i -> build/lib.macosx-10.11-intel-2.7/pygraphviz copying pygraphviz/graphviz_wrap.c -> build/lib.macosx-10.11-intel-2.7/pygraphviz running build_ext building 'pygraphviz._graphviz' extension creating build/temp.macosx-10.11-intel-2.7 creating build/temp.macosx-10.11-intel-2.7/pygraphviz cc -fno-strict-aliasing -fno-common -dynamic -arch i386 -arch x86_64 -g -Os -pipe -fno-common -fno-strict-aliasing -fwrapv -DENABLE_DTRACE -DMACOSX -DNDEBUG -Wall -Wstrict-prototypes -Wshorten-64-to-32 -DNDEBUG -g -fwrapv -Os -Wall -Wstrict-prototypes -DENABLE_DTRACE -arch i386 -arch x86_64 -pipe -I/System/Library/Frameworks/Python.framework/Versions/2.7/include/python2.7 -c pygraphviz/graphviz_wrap.c -o build/temp.macosx-10.11-intel-2.7/pygraphviz/graphviz_wrap.o pygraphviz/graphviz_wrap.c:3321:12: warning: incompatible pointer to integer conversion returning 'Agsym_t *' (aka 'struct Agsym_s *') from a function with result type 'int' [-Wint-conversion] return agattr(g, kind, name, val); ^~~~~~~~~~~~~~~~~~~~~~~~~~ pygraphviz/graphviz_wrap.c:3405:7: warning: unused variable 'fd1' [-Wunused-variable] int fd1 ; ^ pygraphviz/graphviz_wrap.c:3406:13: warning: unused variable 'mode_obj1' [-Wunused-variable] PyObject *mode_obj1 ; ^ pygraphviz/graphviz_wrap.c:3407:13: warning: unused variable 'mode_byte_obj1' [-Wunused-variable] PyObject *mode_byte_obj1 ; ^ pygraphviz/graphviz_wrap.c:3408:9: warning: unused variable 'mode1' [-Wunused-variable] char *mode1 ; ^ pygraphviz/graphviz_wrap.c:3463:7: warning: unused variable 'fd2' [-Wunused-variable] int fd2 ; ^ pygraphviz/graphviz_wrap.c:3464:13: warning: unused variable 'mode_obj2' [-Wunused-variable] PyObject *mode_obj2 ; ^ pygraphviz/graphviz_wrap.c:3465:13: warning: unused variable 'mode_byte_obj2' [-Wunused-variable] PyObject *mode_byte_obj2 ; ^ pygraphviz/graphviz_wrap.c:3466:9: warning: unused variable 'mode2' [-Wunused-variable] char *mode2 ; ^ 9 warnings generated. pygraphviz/graphviz_wrap.c:3295:15: warning: implicit conversion loses integer precision: 'unsigned long' to 'int' [-Wshorten-64-to-32] len = strlen(val); ~ ^~~~~~~~~~~ pygraphviz/graphviz_wrap.c:3321:12: warning: incompatible pointer to integer conversion returning 'Agsym_t *' (aka 'struct Agsym_s *') from a function with result type 'int' [-Wint-conversion] return agattr(g, kind, name, val); ^~~~~~~~~~~~~~~~~~~~~~~~~~ pygraphviz/graphviz_wrap.c:3313:15: warning: implicit conversion loses integer precision: 'unsigned long' to 'int' [-Wshorten-64-to-32] len = strlen(val); ~ ^~~~~~~~~~~ pygraphviz/graphviz_wrap.c:3405:7: warning: unused variable 'fd1' [-Wunused-variable] int fd1 ; ^ pygraphviz/graphviz_wrap.c:3406:13: warning: unused variable 'mode_obj1' [-Wunused-variable] PyObject *mode_obj1 ; ^ pygraphviz/graphviz_wrap.c:3407:13: warning: unused variable 'mode_byte_obj1' [-Wunused-variable] PyObject *mode_byte_obj1 ; ^ pygraphviz/graphviz_wrap.c:3408:9: warning: unused variable 'mode1' [-Wunused-variable] char *mode1 ; ^ pygraphviz/graphviz_wrap.c:3463:7: warning: unused variable 'fd2' [-Wunused-variable] int fd2 ; ^ pygraphviz/graphviz_wrap.c:3464:13: warning: unused variable 'mode_obj2' [-Wunused-variable] PyObject *mode_obj2 ; ^ pygraphviz/graphviz_wrap.c:3465:13: warning: unused variable 'mode_byte_obj2' [-Wunused-variable] PyObject *mode_byte_obj2 ; ^ pygraphviz/graphviz_wrap.c:3466:9: warning: unused variable 'mode2' [-Wunused-variable] char *mode2 ; ^ 11 warnings generated. cc -bundle -undefined dynamic_lookup -arch i386 -arch x86_64 -Wl,-F. build/temp.macosx-10.11-intel-2.7/pygraphviz/graphviz_wrap.o -lcgraph -lcdt -o build/lib.macosx-10.11-intel-2.7/pygraphviz/_graphviz.so ld: warning: ignoring file /usr/local/lib/libcdt.dylib, file was built for x86_64 which is not the architecture being linked (i386): /usr/local/lib/libcdt.dylib ld: warning: ignoring file /usr/local/lib/libcgraph.dylib, file was built for x86_64 which is not the architecture being linked (i386): /usr/local/lib/libcgraph.dylib installing to build/bdist.macosx-10.11-intel/wheel running install Trying pkg-config Failed to find pkg-config Trying dotneato-config Failed to find dotneato-config Failed to find dotneato-config Your Graphviz installation could not be found. 1) You don't have Graphviz installed: Install Graphviz (http://graphviz.org) 2) Your Graphviz package might incomplete. Install the binary development subpackage (e.g. libgraphviz-dev or similar.) 3) You are using Windows There are no PyGraphviz binary packages for Windows but you might be able to build it from this source. See http://networkx.lanl.gov/pygraphviz/reference/faq.html If you think your installation is correct you will need to manually change the include_dirs and library_dirs variables in setup.py to point to the correct locations of your graphviz installation. The current setting of library_dirs and include_dirs is: library_dirs=None include_dirs=None error: Error locating graphviz. ---------------------------------------- Failed building wheel for pygraphviz Running setup.py clean for pygraphviz Failed to build pygraphviz Installing collected packages: pygraphviz Running setup.py install for pygraphviz ... error Complete output from command /Users/zyl/song/lebi/lebienv/bin/python -u -c "import setuptools, tokenize;__file__='/private/var/folders/5t/965cgdc56ks37w8pmlmw4vx40000gn/T/pip-build-x2Vstw/pygraphviz/setup.py';exec(compile(getattr(tokenize, 'open', open)(__file__).read().replace('\r\n', '\n'), __file__, 'exec'))" install --record /var/folders/5t/965cgdc56ks37w8pmlmw4vx40000gn/T/pip-1imEXi-record/install-record.txt --single-version-externally-managed --compile --install-headers /Users/zyl/song/lebi/lebienv/include/site/python2.7/pygraphviz: running install Trying pkg-config Failed to find pkg-config Trying dotneato-config Failed to find dotneato-config Failed to find dotneato-config Your Graphviz installation could not be found. 1) You don't have Graphviz installed: Install Graphviz (http://graphviz.org) 2) Your Graphviz package might incomplete. Install the binary development subpackage (e.g. libgraphviz-dev or similar.) 3) You are using Windows There are no PyGraphviz binary packages for Windows but you might be able to build it from this source. See http://networkx.lanl.gov/pygraphviz/reference/faq.html If you think your installation is correct you will need to manually change the include_dirs and library_dirs variables in setup.py to point to the correct locations of your graphviz installation. The current setting of library_dirs and include_dirs is: library_dirs=None include_dirs=None error: Error locating graphviz. ---------------------------------------- Command "/Users/zyl/song/lebi/lebienv/bin/python -u -c "import setuptools, tokenize;__file__='/private/var/folders/5t/965cgdc56ks37w8pmlmw4vx40000gn/T/pip-build-x2Vstw/pygraphviz/setup.py';exec(compile(getattr(tokenize, 'open', open)(__file__).read().replace('\r\n', '\n'), __file__, 'exec'))" install --record /var/folders/5t/965cgdc56ks37w8pmlmw4vx40000gn/T/pip-1imEXi-record/install-record.txt --single-version-externally-managed --compile --install-headers /Users/zyl/song/lebi/lebienv/include/site/python2.7/pygraphviz" failed with error code 1 in /private/var/folders/5t/965cgdc56ks37w8pmlmw4vx40000gn/T/pip-build-x2Vstw/pygraphviz System :Mac OS X Version:10.11.1 how to fix the problem. Continue reading...
