[Python] How do I fix the error when installing the pysam package?

Discussão em 'Python' iniciado por Stack, Janeiro 27, 2025.

  1. Stack

    Stack Membro Participativo

    I decided to install the gemini package via pip install gemini in the console, an error was issued when installing pysam, I already installed cython, added it to the PATH, but the error still persists, help solve the problem, below I attach messages from the console in text and as a screenshot. The text version:

    C:\Users\1>pip install pysam
    Collecting pysam
    Downloading pysam-0.22.0.tar.gz (4.6 MB)
    ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 4.6/4.6 MB 2.9 MB/s eta 0:00:00
    Installing build dependencies ... done
    Getting requirements to build wheel ... error
    error: subprocess-exited-with-error

    × Getting requirements to build wheel did not run successfully.
    │ exit code: 1
    ╰─> [40 lines of output]
    # pysam: cython is available - using cythonize if necessary
    # pysam: htslib mode is shared
    # pysam: HTSLIB_CONFIGURE_OPTIONS=None
    "." Ґ пў«пҐвбп ўгв॥© Ё«Ё ўҐиҐ©
    Є®¬ ¤®©, ЁбЇ®«пҐ¬®© Їа®Ја ¬¬®© Ё«Ё Ї ЄҐвл¬ д ©«®¬.
    "." Ґ пў«пҐвбп ўгв॥© Ё«Ё ўҐиҐ©
    Є®¬ ¤®©, ЁбЇ®«пҐ¬®© Їа®Ја ¬¬®© Ё«Ё Ї ЄҐвл¬ д ©«®¬.
    # pysam: htslib configure options: None
    Traceback (most recent call last):
    File "C:\Users\1\AppData\Local\Programs\Python\Python312\Lib\site-packages\pip\_vendor\pyproject_hooks\_in_process\_in_process.py", line 353, in <module>
    main()
    File "C:\Users\1\AppData\Local\Programs\Python\Python312\Lib\site-packages\pip\_vendor\pyproject_hooks\_in_process\_in_process.py", line 335, in main
    json_out['return_val'] = hook(**hook_input['kwargs'])
    ^^^^^^^^^^^^^^^^^^^^^^^^^^^^
    File "C:\Users\1\AppData\Local\Programs\Python\Python312\Lib\site-packages\pip\_vendor\pyproject_hooks\_in_process\_in_process.py", line 118, in get_requires_for_build_wheel
    return hook(config_settings)
    ^^^^^^^^^^^^^^^^^^^^^
    File "C:\Users\1\AppData\Local\Temp\pip-build-env-ub99jpmq\overlay\Lib\site-packages\setuptools\build_meta.py", line 325, in get_requires_for_build_wheel
    return self._get_build_requires(config_settings, requirements=['wheel'])
    ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
    File "C:\Users\1\AppData\Local\Temp\pip-build-env-ub99jpmq\overlay\Lib\site-packages\setuptools\build_meta.py", line 295, in _get_build_requires
    self.run_setup()
    File "C:\Users\1\AppData\Local\Temp\pip-build-env-ub99jpmq\overlay\Lib\site-packages\setuptools\build_meta.py", line 480, in run_setup
    super(_BuildMetaLegacyBackend, self).run_setup(setup_script=setup_script)
    File "C:\Users\1\AppData\Local\Temp\pip-build-env-ub99jpmq\overlay\Lib\site-packages\setuptools\build_meta.py", line 311, in run_setup
    exec(code, locals())
    File "<string>", line 442, in <module>
    File "<string>", line 82, in run_make_print_config
    File "C:\Users\1\AppData\Local\Programs\Python\Python312\Lib\subprocess.py", line 466, in check_output
    return run(*popenargs, stdout=PIPE, timeout=timeout, check=True,
    ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
    File "C:\Users\1\AppData\Local\Programs\Python\Python312\Lib\subprocess.py", line 548, in run
    with Popen(*popenargs, **kwargs) as process:
    ^^^^^^^^^^^^^^^^^^^^^^^^^^^
    File "C:\Users\1\AppData\Local\Programs\Python\Python312\Lib\subprocess.py", line 1026, in __init__
    self._execute_child(args, executable, preexec_fn, close_fds,
    File "C:\Users\1\AppData\Local\Programs\Python\Python312\Lib\subprocess.py", line 1538, in _execute_child
    hp, ht, pid, tid = _winapi.CreateProcess(executable, args,
    ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
    FileNotFoundError: [WinError 2] Не удается найти указанный файл
    [end of output]

    note: This error originates from a subprocess, and is likely not a problem with pip.
    error: subprocess-exited-with-error

    × Getting requirements to build wheel did not run successfully.
    │ exit code: 1
    ╰─> See above for output.
    note: This error originates from a subprocess, and is likely not a problem with pip.


    Screenshot: Screenshot of console

    I tried to use the restriction when installing gemini (Cython version < 3.0), added it to the PATH, but the error is still there and I don't understand how to get rid of it, the Python version is 64-bit

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