I'm using python environment in Rstudio to load some packages, but when I try to load "scvelo" I found this message. I don't know where it comes from >>> import scvelo as scv Traceback (most recent call last): File "<string>", line 1, in <module> File "/home/olga/R/x86_64-pc-linux-gnu-library/4.3/reticulate/python/rpytools/loader.py", line 119, in _find_and_load_hook return _run_hook(name, _hook) File "/home/olga/R/x86_64-pc-linux-gnu-library/4.3/reticulate/python/rpytools/loader.py", line 93, in _run_hook module = hook() File "/home/olga/R/x86_64-pc-linux-gnu-library/4.3/reticulate/python/rpytools/loader.py", line 117, in _hook return _find_and_load(name, import_) File "/home/olga/.local/share/r-miniconda/envs/r-reticulate/lib/python3.9/site-packages/scvelo/__init__.py", line 3, in <module> from scanpy import read, read_loom File "/home/olga/R/x86_64-pc-linux-gnu-library/4.3/reticulate/python/rpytools/loader.py", line 119, in _find_and_load_hook return _run_hook(name, _hook) File "/home/olga/R/x86_64-pc-linux-gnu-library/4.3/reticulate/python/rpytools/loader.py", line 93, in _run_hook module = hook() File "/home/olga/R/x86_64-pc-linux-gnu-library/4.3/reticulate/python/rpytools/loader.py", line 117, in _hook return _find_and_load(name, import_) File "/home/olga/.local/share/r-miniconda/envs/r-reticulate/lib/python3.9/site-packages/scanpy/__init__.py", line 6, in <module> from ._utils import check_versions File "/home/olga/R/x86_64-pc-linux-gnu-library/4.3/reticulate/python/rpytools/loader.py", line 119, in _find_and_load_hook return _run_hook(name, _hook) File "/home/olga/R/x86_64-pc-linux-gnu-library/4.3/reticulate/python/rpytools/loader.py", line 93, in _run_hook module = hook() File "/home/olga/R/x86_64-pc-linux-gnu-library/4.3/reticulate/python/rpytools/loader.py", line 117, in _hook return _find_and_load(name, import_) File "/home/olga/.local/share/r-miniconda/envs/r-reticulate/lib/python3.9/site-packages/scanpy/_utils/__init__.py", line 28, in <module> from .compute.is_constant import is_constant File "/home/olga/R/x86_64-pc-linux-gnu-library/4.3/reticulate/python/rpytools/loader.py", line 119, in _find_and_load_hook return _run_hook(name, _hook) File "/home/olga/R/x86_64-pc-linux-gnu-library/4.3/reticulate/python/rpytools/loader.py", line 93, in _run_hook module = hook() File "/home/olga/R/x86_64-pc-linux-gnu-library/4.3/reticulate/python/rpytools/loader.py", line 117, in _hook return _find_and_load(name, import_) File "/home/olga/.local/share/r-miniconda/envs/r-reticulate/lib/python3.9/site-packages/scanpy/_utils/compute/is_constant.py", line 5, in <module> from numba import njit File "/home/olga/R/x86_64-pc-linux-gnu-library/4.3/reticulate/python/rpytools/loader.py", line 119, in _find_and_load_hook return _run_hook(name, _hook) File "/home/olga/R/x86_64-pc-linux-gnu-library/4.3/reticulate/python/rpytools/loader.py", line 93, in _run_hook module = hook() File "/home/olga/R/x86_64-pc-linux-gnu-library/4.3/reticulate/python/rpytools/loader.py", line 117, in _hook return _find_and_load(name, import_) File "/home/olga/.local/share/r-miniconda/envs/r-reticulate/lib/python3.9/site-packages/numba/__init__.py", line 43, in <module> from numba.np.ufunc import (vectorize, guvectorize, threading_layer, File "/home/olga/R/x86_64-pc-linux-gnu-library/4.3/reticulate/python/rpytools/loader.py", line 119, in _find_and_load_hook return _run_hook(name, _hook) File "/home/olga/R/x86_64-pc-linux-gnu-library/4.3/reticulate/python/rpytools/loader.py", line 93, in _run_hook module = hook() File "/home/olga/R/x86_64-pc-linux-gnu-library/4.3/reticulate/python/rpytools/loader.py", line 117, in _hook return _find_and_load(name, import_) File "/home/olga/.local/share/r-miniconda/envs/r-reticulate/lib/python3.9/site-packages/numba/np/ufunc/__init__.py", line 3, in <module> from numba.np.ufunc.decorators import Vectorize, GUVectorize, vectorize, guvectorize File "/home/olga/R/x86_64-pc-linux-gnu-library/4.3/reticulate/python/rpytools/loader.py", line 119, in _find_and_load_hook return _run_hook(name, _hook) File "/home/olga/R/x86_64-pc-linux-gnu-library/4.3/reticulate/python/rpytools/loader.py", line 93, in _run_hook module = hook() File "/home/olga/R/x86_64-pc-linux-gnu-library/4.3/reticulate/python/rpytools/loader.py", line 117, in _hook return _find_and_load(name, import_) File "/home/olga/.local/share/r-miniconda/envs/r-reticulate/lib/python3.9/site-packages/numba/np/ufunc/decorators.py", line 3, in <module> from numba.np.ufunc import _internal File "/home/olga/R/x86_64-pc-linux-gnu-library/4.3/reticulate/python/rpytools/loader.py", line 119, in _find_and_load_hook return _run_hook(name, _hook) File "/home/olga/R/x86_64-pc-linux-gnu-library/4.3/reticulate/python/rpytools/loader.py", line 93, in _run_hook module = hook() File "/home/olga/R/x86_64-pc-linux-gnu-library/4.3/reticulate/python/rpytools/loader.py", line 117, in _hook return _find_and_load(name, import_) SystemError: initialization of _internal failed without raising an exception >>> import scvelo as scv Traceback (most recent call last): File "<string>", line 1, in <module> File "/home/olga/R/x86_64-pc-linux-gnu-library/4.3/reticulate/python/rpytools/loader.py", line 119, in _find_and_load_hook return _run_hook(name, _hook) File "/home/olga/R/x86_64-pc-linux-gnu-library/4.3/reticulate/python/rpytools/loader.py", line 93, in _run_hook module = hook() File "/home/olga/R/x86_64-pc-linux-gnu-library/4.3/reticulate/python/rpytools/loader.py", line 117, in _hook return _find_and_load(name, import_) File "/home/olga/.local/share/r-miniconda/envs/r-reticulate/lib/python3.9/site-packages/scvelo/__init__.py", line 3, in <module> from scanpy import read, read_loom File "/home/olga/R/x86_64-pc-linux-gnu-library/4.3/reticulate/python/rpytools/loader.py", line 119, in _find_and_load_hook return _run_hook(name, _hook) File "/home/olga/R/x86_64-pc-linux-gnu-library/4.3/reticulate/python/rpytools/loader.py", line 93, in _run_hook module = hook() File "/home/olga/R/x86_64-pc-linux-gnu-library/4.3/reticulate/python/rpytools/loader.py", line 117, in _hook return _find_and_load(name, import_) File "/home/olga/.local/share/r-miniconda/envs/r-reticulate/lib/python3.9/site-packages/scanpy/__init__.py", line 6, in <module> from ._utils import check_versions File "/home/olga/R/x86_64-pc-linux-gnu-library/4.3/reticulate/python/rpytools/loader.py", line 119, in _find_and_load_hook return _run_hook(name, _hook) File "/home/olga/R/x86_64-pc-linux-gnu-library/4.3/reticulate/python/rpytools/loader.py", line 93, in _run_hook module = hook() File "/home/olga/R/x86_64-pc-linux-gnu-library/4.3/reticulate/python/rpytools/loader.py", line 117, in _hook return _find_and_load(name, import_) File "/home/olga/.local/share/r-miniconda/envs/r-reticulate/lib/python3.9/site-packages/scanpy/_utils/__init__.py", line 28, in <module> from .compute.is_constant import is_constant File "/home/olga/R/x86_64-pc-linux-gnu-library/4.3/reticulate/python/rpytools/loader.py", line 119, in _find_and_load_hook return _run_hook(name, _hook) File "/home/olga/R/x86_64-pc-linux-gnu-library/4.3/reticulate/python/rpytools/loader.py", line 93, in _run_hook module = hook() File "/home/olga/R/x86_64-pc-linux-gnu-library/4.3/reticulate/python/rpytools/loader.py", line 117, in _hook return _find_and_load(name, import_) File "/home/olga/.local/share/r-miniconda/envs/r-reticulate/lib/python3.9/site-packages/scanpy/_utils/compute/is_constant.py", line 5, in <module> from numba import njit File "/home/olga/R/x86_64-pc-linux-gnu-library/4.3/reticulate/python/rpytools/loader.py", line 119, in _find_and_load_hook return _run_hook(name, _hook) File "/home/olga/R/x86_64-pc-linux-gnu-library/4.3/reticulate/python/rpytools/loader.py", line 93, in _run_hook module = hook() File "/home/olga/R/x86_64-pc-linux-gnu-library/4.3/reticulate/python/rpytools/loader.py", line 117, in _hook return _find_and_load(name, import_) File "/home/olga/.local/share/r-miniconda/envs/r-reticulate/lib/python3.9/site-packages/numba/__init__.py", line 43, in <module> from numba.np.ufunc import (vectorize, guvectorize, threading_layer, File "/home/olga/R/x86_64-pc-linux-gnu-library/4.3/reticulate/python/rpytools/loader.py", line 119, in _find_and_load_hook return _run_hook(name, _hook) File "/home/olga/R/x86_64-pc-linux-gnu-library/4.3/reticulate/python/rpytools/loader.py", line 93, in _run_hook module = hook() File "/home/olga/R/x86_64-pc-linux-gnu-library/4.3/reticulate/python/rpytools/loader.py", line 117, in _hook return _find_and_load(name, import_) File "/home/olga/.local/share/r-miniconda/envs/r-reticulate/lib/python3.9/site-packages/numba/np/ufunc/__init__.py", line 3, in <module> from numba.np.ufunc.decorators import Vectorize, GUVectorize, vectorize, guvectorize File "/home/olga/R/x86_64-pc-linux-gnu-library/4.3/reticulate/python/rpytools/loader.py", line 119, in _find_and_load_hook return _run_hook(name, _hook) File "/home/olga/R/x86_64-pc-linux-gnu-library/4.3/reticulate/python/rpytools/loader.py", line 93, in _run_hook module = hook() File "/home/olga/R/x86_64-pc-linux-gnu-library/4.3/reticulate/python/rpytools/loader.py", line 117, in _hook return _find_and_load(name, import_) File "/home/olga/.local/share/r-miniconda/envs/r-reticulate/lib/python3.9/site-packages/numba/np/ufunc/decorators.py", line 3, in <module> from numba.np.ufunc import _internal File "/home/olga/R/x86_64-pc-linux-gnu-library/4.3/reticulate/python/rpytools/loader.py", line 119, in _find_and_load_hook return _run_hook(name, _hook) File "/home/olga/R/x86_64-pc-linux-gnu-library/4.3/reticulate/python/rpytools/loader.py", line 93, in _run_hook module = hook() File "/home/olga/R/x86_64-pc-linux-gnu-library/4.3/reticulate/python/rpytools/loader.py", line 117, in _hook return _find_and_load(name, import_) SystemError: initialization of _internal failed without raising an exception with other packages, like pandas, anndata, matplotlib it works fine. where is the error? I've tried to remove and reinstall numba and numpy but I did not fix it. Info: reticulate::repl_python() Python 3.9.18 (/home/olga/.local/share/r-miniconda/envs/r-reticulate/bin/python) Reticulate 1.32.0 REPL -- A Python interpreter in R. Enter 'exit' or 'quit' to exit the REPL and return to R. Continue reading...
