I have difficulties setting my environment variables when launching a python script using Slurm. The following python script import petsc4py without error when launched from a shell session : from petsc4py import PETSc print("petsc4py imported successfully") However when I try to run it using srun with the following sbatch script (first setting the same environment by sourcing the same python env and loading the same modules) : #!/bin/bash #SBATCH --job-name=petsc4py_import_test #SBATCH --ntasks=2 #SBATCH --cpus-per-task=8 #SBATCH --time=00:30:00 #SBATCH --output=output.log #SBATCH --error=error.log #SBATCH --nodes=1 source $HOME/.bash_profile module purge module load python/3.10.0 openmpi gcc openblas/latest slurm source $HOME/my_env/bin/activate srun --export=ALL --mpi=pmix_v3 python3 petsc4py_test.py It fails with : ImportError: liblapack.so.3: cannot open shared object file: No such file or directory srun: error: node001: tasks 0-1: Exited with exit code 1 Continue reading...